On Mon, Oct 29, 2012 at 9:23 PM, Todd Oakley
<todd.oak...@lifesci.ucsb.edu> wrote:
> We've developed a large number of tools to allow my lab to conduct
> phylogenetic analyses in Galaxy. Inspired by the mothur package in Galaxy,
> which is all in one repo, I made the decision to add all our related tools
> to 1 repo on the tool shed. However, it seems that makes individual tools
> like raxml difficult to find for other users.

Todd, I prefer bundling related tools (and other assets) in repositories.

If the problem is discovery perhaps we can fix this in the toolshed UI
by adding the ability to browse for tools directly in addition to
browsing for repositories?
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