Hi Vladimir

On 11/01/2012 03:46 AM, Vladimir Yamshchikov wrote:
Local install of Galaxy on SciLinux55. Fails to upload 5.2 GB fastq file
from local HD, while normally loading smaller fastq and fasta datasets
(less than 1 GB). Chunks of 1.2 GB size remain in */database/tmp, which
all represent beginning of the file that fails to upload. Several
attempts to upload made and several chunks of the same size are present.
Can I just copy the file dataset to database directory instead of
uploading through web interface?



Make sure you provide a directory for "library_import_dir" in the universe_wsgi.ini file. And copy your files to this location (or a sub directory of it). This will give you an extra option in the admin menu: 'Upload directory of files' and then use the 'Link files without copying to Galaxy' option.


Alternatively, set "allow_library_path_paste" to 'True' (see also the comments and warnings in the universe_wsgi.ini file )


Regards, Hans-Rudolf









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