Yes, primer3 is available as a command line tool, it was just an example, the one I'm actually after is optimus primer.. I'm sure there are several web-tools out there that would be nice to get to Galaxy... Any Ideas??
Regards, Franco On 5/11/12 11:18 PM, "Peter Cock" <p.j.a.c...@googlemail.com> wrote: > On Mon, Nov 5, 2012 at 5:53 AM, Franco Caramia > <franco.cara...@petermac.org> wrote: >> Hi list, >> >> I¹m trying to find documentation or examples on how to wrap web-tools >> (like primer3, optimus primer) in Galaxy. >> >> Any useful links or examples would be of great help. >> >> Thanks, >> >> Franco > > I'm not answering your question, but Primer3 is available as a command > line tool, so why do you want to wrap a web-tool version of it? > > Also EMBOSS have a command line wrapper providing a conventional > Unix API to primer3. There are some EMBOSS wrappers in the Galaxy > ToolShed, but I don't see one for primer3 yet. > > Regards, > > Peter This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/