I always see this error pop up in the logs when one of the steps failed...
It seems to have a problem deleting the working directory since it claims they are not empty.
Ofcourse when I check, the directory is empty, but I am left with a gazilion empty working directories, alhtough no problems with the installation otherwise...

Using the latest pull 

Any ideas?



galaxy.datatypes.metadata DEBUG 2012-11-08 15:43:29,532 Cleaning up external metadata files
galaxy.objectstore CRITICAL 2012-11-08 15:43:29,621 /mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/105 delet
e error [Errno 39] Directory not empty: '/mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/105'

 ls -la /mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/105
total 36K
drwxrwsr-x  2 svcgalaxy   0 Nov  8 15:42 .
drwxrwsr-x 30 svcgalaxy 565 Nov  8 15:42 ..
(galaxy_env)[svcgalaxy@srv151 g]$

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