I have written a perl script to perform some complex demultiplexing of
reads. It works well on my computer but the integration to Galaxy is a bit
tricky since it's the first time for me.
At one point my perl script generates a bunch of fasta files, I want all
this fasta files to be compressed and I use a tar command within the script
to do so. I am not sure how to do the same within the Galaxy execution.
I think it might work out with the "from_work_dir" attributes of the output
tag but I don't know exactly where my script should write these fasta files
and compress them so that the archive could be retrieve.
I don't know either what to put in the "format" attributes since gz is not
in the supported datatype or is it ? Should I create a new datatype ? The
ending point of my tool would be to have the user be able to download one
compressed file that would contains all the sorted fasta files.
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