I received an email from one of my end users that she was having an issue with
the "Realigner Target Creator" under NGS: GATK Tools. Here's the error: An
error occurred running this job: "Unable to access jar file
That was easy to resolve since the jar file is located at either
modified the xml to point to the /1.4.2 directory and now I get "Could not
create the Java virtual machine." I have looked at the wrapper for java
settings and restarted the Galaxy server, but am at a loss. Do you have any
Scientific Applications Administrator
Scientific Computing Group
Computational Sciences Dept.
The Jackson Laboratory
600 Main Street
Bar Harbor, ME 04609
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