What is the error that you're seeing on the server side?

I haven't tried this myself, but Brad Chapman suggested this example payload:

--
{"tool_id": "upload1",
"history_id": "identifier of history to use",
"params": {"file_type": "vcf",
           "dbkey": "hg19",
           "files_0|url_paste": http://jbrowse-server.org/path/to/file.vcf";,
           "files_0|NAME": "file_name_for_history.vcf"}} 
--

Maybe try removing file_type and adding files0|NAME?

J.

On Nov 12, 2012, at 6:42 PM, Ted Goldstein wrote:

> Essentially, this the similar to a dataset upload where the origin is from a 
> web page when a user clicks on a HTML button. The button is not part of the 
> tool framework but any number of possible
> I am writing a variety of data editors in JavaScript and it would be 
> convenient to upload the dataset into the user's current history list.
> of JavaScript actions.
> 
> I think I should be able to use the regular upload1 (upload.py) machinery. 
> But So far, I have not had success in tricking it with my JavaScript 
> function. I know that I could add web api. But there is a lot hairy code in 
> the history dataset association that looks like it will change. So I'd rather 
> keep it simple.
> 
> Does anyone have any suggestions?
> 
> Thanks,
> Ted
> 
> 
> function UploadToHistory(name, value) { 
>     var 
>     payload = {  tool_id: "upload1",
>         'file_type': 'tabular', 
>         'file_name', name,
>         'dbkey': '?', 
>         'files_0|url_paste': value};
> 
>     $.ajax( {
>         async:      false,
>         type:       "POST",
>         url:        "/tool_runner/index",
>         data:       payload,
>         dataType:   "json",
>         success:    function(array_obj, status) { console.log("success", 
> array_obj, status); },
>         failure:    function() {console.log("fail");}
>     } );
> }
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