Dannon, I wanted to apply the patch as well on our fresh instance. But it fails with the error of uncomitted changes.. But we only pull/merge/update using hg nothing else we do with it....any clues? We only locally modified files of course (like the wsgi.ini files and loc files).
$ hg patch --no-commit modulefix.patch abort: outstanding uncommitted changes Alex -----Oorspronkelijk bericht----- Van: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Dannon Baker Verzonden: woensdag 14 november 2012 14:18 Aan: Sanjarbek Hudaiberdiev CC: galaxy-...@bx.psu.edu Onderwerp: Re: [galaxy-dev] Can't edit galaxy workflow This changeset is only in galaxy-central, at the moment, and not galaxy-dist. You have a few options here: Pull directly from -central to the revision indicated (though this means you will be updating your instance to less thoroughly tested galaxy-central code): hg pull -u -r 5013377e0bf7 http://bitbucket.org/galaxy/galaxy-central/ Or, probably preferable to that, you could apply just the individual changeset as a patch (which will merge in silently when you do update -dist). Simply execute the following within your galaxy-dist directory: curl https://bitbucket.org/galaxy/galaxy-central/changeset/5013377e0bf7/raw > modulefix.patch hg patch --no-commit modulefix.patch -Dannon On Nov 14, 2012, at 8:04 AM, Sanjarbek Hudaiberdiev <hudai...@icgeb.org> wrote: > Thanks a lot Dannon, for your reply. > > But hg keeps saying following when I try to pull: "abort: unknown revision > '5013377e0bf7'!" > > Is there any other way of manually getting it? > > (Sorry, I'm not an expert on those new SCMs) Sanjar. > > On 11/13/2012 06:33 PM, Dannon Baker wrote: >> Sanjar, >> >> This is fixed as of 5013377e0bf7. This may not be in the next distribution, >> but will be in the one after that. Of course, you can manually pull the >> change from galaxy-central at any time. >> >> -Dannon >> >> >> On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev <hudai...@icgeb.org> >> wrote: >> >>> I tried to reply to similar posts, but couldn't figure out how to do it. So >>> posting again: >>> >>> Galaxy giving this error when editing workflow, just after creating >>> workflow from existing history: >>> >>> URL: >>> http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e&_ >>> =1352817462148 Module weberror.evalexception.middleware:364 in >>> respond >>>>> app_iter = self.application(environ, detect_start_response) >>> Module paste.debug.prints:98 in __call__ >>>>> environ, self.app) >>> Module paste.wsgilib:539 in intercept_output >>>>> app_iter = application(environ, replacement_start_response) >>> Module paste.recursive:80 in __call__ >>>>> return self.application(environ, start_response) >>> Module paste.httpexceptions:632 in __call__ >>>>> return self.application(environ, start_response) >>> Module galaxy.web.framework.base:160 in __call__ >>>>> body = method( trans, **kwargs ) >>> Module galaxy.web.framework:73 in decorator >>>>> return simplejson.dumps( func( self, trans, *args, **kwargs ) ) >>> Module galaxy.webapps.galaxy.controllers.workflow:733 in >>> load_workflow >>>>> 'tooltip': module.get_tooltip( static_path=url_for( '/static' ) >>>>> ), >>> Module galaxy.workflow.modules:258 in get_tooltip >>>>> return self.tool.help.render( static_path=static_path ) >>> AttributeError: 'NoneType' object has no attribute 'render' >>> >>> Could anyone help me to solve this problem? >>> >>> Thanks, >>> Sanjar. >>> ___________________________________________________________ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this and other >>> Galaxy lists, please use the interface at: >>> >>> http://lists.bx.psu.edu/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/