Dannon,

I wanted to apply the patch as well on our fresh instance. But it fails with 
the error of uncomitted changes..
But we only pull/merge/update using hg nothing else we do with it....any clues?
We only locally modified files of course (like the wsgi.ini files and loc 
files).

$ hg patch --no-commit modulefix.patch
abort: outstanding uncommitted changes

Alex


-----Oorspronkelijk bericht-----
Van: galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Dannon Baker
Verzonden: woensdag 14 november 2012 14:18
Aan: Sanjarbek Hudaiberdiev
CC: galaxy-...@bx.psu.edu
Onderwerp: Re: [galaxy-dev] Can't edit galaxy workflow

This changeset is only in galaxy-central, at the moment, and not galaxy-dist.  
You have a few options here:

Pull directly from -central to the revision indicated (though this means you 
will be updating your instance to less thoroughly tested galaxy-central code):

hg pull -u -r 5013377e0bf7 http://bitbucket.org/galaxy/galaxy-central/

Or, probably preferable to that, you could apply just the individual changeset 
as a patch (which will merge in silently when you do update -dist).  Simply 
execute the following within your galaxy-dist directory:

curl https://bitbucket.org/galaxy/galaxy-central/changeset/5013377e0bf7/raw > 
modulefix.patch hg patch --no-commit modulefix.patch

-Dannon


On Nov 14, 2012, at 8:04 AM, Sanjarbek Hudaiberdiev <hudai...@icgeb.org> wrote:

> Thanks a lot Dannon, for your reply.
> 
> But hg keeps saying following when I try to pull: "abort: unknown revision 
> '5013377e0bf7'!"
> 
> Is there any other way of manually getting it?
> 
> (Sorry, I'm not an expert on those new SCMs) Sanjar.
> 
> On 11/13/2012 06:33 PM, Dannon Baker wrote:
>> Sanjar,
>> 
>> This is fixed as of 5013377e0bf7.  This may not be in the next distribution, 
>> but will be in the one after that.  Of course, you can manually pull the 
>> change from galaxy-central at any time.
>> 
>> -Dannon
>> 
>> 
>> On Nov 13, 2012, at 9:45 AM, Sanjarbek Hudaiberdiev <hudai...@icgeb.org> 
>> wrote:
>> 
>>> I tried to reply to similar posts, but couldn't figure out how to do it. So 
>>> posting again:
>>> 
>>> Galaxy giving this error when editing workflow, just after creating 
>>> workflow from existing history:
>>> 
>>> URL: 
>>> http://localhost/galaxy/workflow/load_workflow?id=df7a1f0c02a5b08e&_
>>> =1352817462148 Module weberror.evalexception.middleware:364 in 
>>> respond
>>>>>  app_iter = self.application(environ, detect_start_response)
>>> Module paste.debug.prints:98 in __call__
>>>>>  environ, self.app)
>>> Module paste.wsgilib:539 in intercept_output
>>>>>  app_iter = application(environ, replacement_start_response)
>>> Module paste.recursive:80 in __call__
>>>>>  return self.application(environ, start_response)
>>> Module paste.httpexceptions:632 in __call__
>>>>>  return self.application(environ, start_response)
>>> Module galaxy.web.framework.base:160 in __call__
>>>>>  body = method( trans, **kwargs )
>>> Module galaxy.web.framework:73 in decorator
>>>>>  return simplejson.dumps( func( self, trans, *args, **kwargs ) )
>>> Module galaxy.webapps.galaxy.controllers.workflow:733 in 
>>> load_workflow
>>>>>  'tooltip': module.get_tooltip( static_path=url_for( '/static' ) 
>>>>> ),
>>> Module galaxy.workflow.modules:258 in get_tooltip
>>>>>  return self.tool.help.render( static_path=static_path )
>>> AttributeError: 'NoneType' object has no attribute 'render'
>>> 
>>> Could anyone help me to solve this problem?
>>> 
>>> Thanks,
>>> Sanjar.
>>> ___________________________________________________________
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> 

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