Hi Akshay,

I don't know the answer to your question.  So:

1) I went to http://galaxyproject.org/search/web/ and searched for
"timeout" and then "timeout workflow."  There are lots of email threads
(and I learned some stuff :-), but I didn't find a direct answer to your

2) I'm sending your question to the galaxy-dev list where it will be seen
by hundreds of galaxy admins and tool developers.  (And this thread will
also be found by any future searches.)


Dave C

On Thu, Nov 15, 2012 at 8:33 AM, <akshaycho...@gmail.com> wrote:

> Hello,
> My name is Akshay and I am a computer science graduate student at UGA in
> Dr. Kissinger's Lab. We have created an extension to galaxy which allowed
> users to add web services as tools into galaxy, these could be either used
> as stand-alone or in a workflow. I wanted to know if Galaxy employs any
> time out strategy.
> Consider a case where I have a workflow with BLASTP now it takes some time
> to run blast and then get result form it. When I try that experiment as
> standalone (i.e., running the run method first and then after several mins
> getting result using job id works) however when I create a workflow in
> which one tool being run method of blast followed by getresult, galaxy
> seems to time out.
> Would appreciate your feedback on the same.
> -Akshay Choche
> Graduate Research Assistant (Kissinger Research Group)
> Center for Tropical and Emerging Global Diseases
> The University of Georgia,
> Athens, GA - 30605
> Tele: 256-520-6541
> Email: acho...@uga.edu, akshaycho...@gmail.com
> http://www.cs.uga.edu/~choche

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