On Nov 16, 2012, at 2:50 PM, greg wrote:

> I'm not getting the red dataset after I changed the new_file_path and
> restarted the galaxy service.
> 
> Now when I upload it just says "Dataset is uploading" forever.
> 
> It seems like it's not trying to launch a job, right?

That seems likely.  I'd try again, in case the upload was interrupted.

--nate

> 
> -Greg
> 
> On Fri, Nov 16, 2012 at 2:45 PM, Nate Coraor <n...@bx.psu.edu> wrote:
>> On Nov 16, 2012, at 2:40 PM, greg wrote:
>> 
>>> I only see HTTP messages.  I haven't seen another error, I now just
>>> see the upload job not ever ending.
>> 
>> Is there any possibility that you have more than one Galaxy server process 
>> running?  The logs only show that an upload attempt was made, but no 
>> indication that a job ever ran.  If you're getting all the way to a red 
>> dataset with output from the upload tool, there should be a lot more in the 
>> log.
>> 
>> --nate
>> 
>>> 
>>> (I'll be away next week so we might have to pick up on this when I'm
>>> back, if you don't hear from me)
>>> 
>>> 10.101.10.34 - - [16/Nov/2012:14:36:46 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:36:50 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:36:54 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:36:55 -0400] "GET
>>> /tool_runner?tool_id=upload1 HTTP/1.1" 200 -
>>> "http://galaxy/root/tool_menu"; "Mozilla/5.0 (Macintosh; Intel Mac OS X
>>> 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64
>>> Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:36:58 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:02 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:06 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST
>>> /tool_runner/upload_async_create HTTP/1.1" 200 - "http://galaxy/";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET
>>> /tool_runner/upload_async_message HTTP/1.1" 200 - "http://galaxy/";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /history HTTP/1.1"
>>> 200 - "http://galaxy/tool_runner/upload_async_message"; "Mozilla/5.0
>>> (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like
>>> Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST
>>> /root/user_get_usage HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:12 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:16 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:20 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:24 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:28 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:32 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:37 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:41 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:45 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:49 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:53 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:37:57 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:01 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:05 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:09 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:13 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:17 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:21 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:25 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:29 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:33 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:37 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:41 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:45 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:49 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 10.101.10.34 - - [16/Nov/2012:14:38:53 -0400] "POST
>>> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history";
>>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11
>>> (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
>>> 
>>> On Fri, Nov 16, 2012 at 2:27 PM, Nate Coraor <n...@bx.psu.edu> wrote:
>>>> On Nov 16, 2012, at 12:42 PM, greg wrote:
>>>> 
>>>>> On Fri, Nov 16, 2012 at 12:28 PM, Nate Coraor <n...@bx.psu.edu> wrote:
>>>>>> If you follow the log, you should see messages from galaxy.jobs, and 
>>>>>> specifically, galaxy.jobs.runners.drmaa.
>>>>>> 
>>>>> No, I don't see anything like that in the log after I started the
>>>>> upload.  Any ideas on how to see what might be going wrong there?
>>>> 
>>>> Could you provide the contents of the log from the time you click the 
>>>> execute button on the tool form until it turns red in the UI?
>>>> 
>>>> I just noticed this thread was on the user list, so I've moved it over to 
>>>> the dev list.
>>>> 
>>>> --nate
>>>> 
>>>>> 
>>>>> -Greg
>>>> 
>> 
> 


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