I performed an upgrade over the weekend.
Since then, I've observed an odd behavior - bowtie2 will not list the new
fastqsanger files in my history.
It will work with files that had already been groomed before the upgrade.
I also see that the groomer is not recognizing fastq files.
The format does seem to be correctly set for these datasets. Is there more than
one place that a dataset's format is stored (and therefore get out of sync)?
Could I have messed up the data types xml file?
It looks ok.
Seems unlikely that this would be a global problem since nobody else has
reported it… but it does seem a bit subtle (only affecting newly tweaked files)
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