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From: Songyan Liu [] 
Sent: Friday, November 23, 2012 1:41 PM
To: ''
Subject: Re. RNA-Seq


I was using Cufflinks to analyze Clip-Seq data. The results as 'gene
expression' and 'transcript expression' gave me almost same results (No. of
genes ? No. of transcripts). I guess the number of genes should be
relatively smaller than that in transcripts.  I wonder if I need to get a
special format for the annotation? I used '62: UCSC Main on Human: refGene



Songyan Liu


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