On Nov 19, 2012, at 10:26 AM, Sajoscha Sauer wrote:
> We are running galaxy on the cluster with the 'real user' submission. It all
> works fine, but at the end of the run we found something unexpected.
> All the .dat files in the file_path folder are owned by the user running
> Galaxy, but all the folders (e.g. dataset_25808_files) are still owned by the
> user that was running the tool on the cluster.
> Is this the expected outcome or is there something wrong?
Are your tools writing to the directory specified by the output's
'extra_files_path' attribute, or by its 'files_path' attribute?
'extra_files_path' always refers to the directory underneath the files/
directory, but 'files_path' refers to the temporary path under the job's
working directory. You'll need to use 'files_path' to have the outputs
collected and ownership changed after completion.
> Thanks for your help,
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Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: