On Nov 19, 2012, at 10:26 AM, Sajoscha Sauer wrote:

> Hi, 
> 
> We are running galaxy on the cluster with the 'real user' submission. It all 
> works fine, but at the end of the run we found something unexpected. 
> 
> All the .dat files in the file_path folder are owned by the user running 
> Galaxy, but all the folders (e.g. dataset_25808_files) are still owned by the 
> user that was running the tool on the cluster. 
> Is this the expected outcome or is there something wrong? 

Hi Sajoscha,

Are your tools writing to the directory specified by the output's 
'extra_files_path' attribute, or by its 'files_path' attribute?  
'extra_files_path' always refers to the directory underneath the files/ 
directory, but 'files_path' refers to the temporary path under the job's 
working directory.  You'll need to use 'files_path' to have the outputs 
collected and ownership changed after completion.

--nate

> 
> Thanks for your help, 
> 
> Sajoscha
> 
> 
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