Hi all,
This is a strange error, still lingering around on our Galaxy. From time
to time, some tools fail, with the same error:
job stderr:
/bin/sh: fastx_clipper: command not found
So I log in as the user Galaxy, and run the tools successfully on the
commandline. The solution is to restart the complete machine. I run
CentOS6.3 with Galaxy distro 12fcd068b12e (Okt 23 release).
Apparently, the PATH of the Galaxy session gets corrupted during running
Galaxy, and I don't know where or how. Anybody a hint? Perhaps somebody
knows how to reset the PATH of the current sessions where Galaxy is
running as?
Thanks,
Joachim
--
Joachim Jacob, PhD
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
