That will be a pain since so many tools can use multiple cores, and if I edit tool XML file, what will happen is I update Galaxy? Will those edited XML be replaced by the files in Galaxy-dist?
Thanks, Frank On Nov 30, 2012, at 3:01 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > > On Thursday, November 29, 2012, Fenglou Mao wrote: > I can use aln -t n to ask BWA to use multiple cores if I run it in command > line, in Galaxy, I did not find this option even i tried "Full Parameter > List", anyone know how to do it? (I installed a local Galaxy server with 64 > cores, I want to use multiple cores to run my jobs.) > > Thanks, > Frank > > The number of cores isn't exposed to the end user (although > in some cases it might make sense to do so), but is rather > down to the Galaxy administrators (in some cases by editing > the defaults in the tool XML or wrapper scripts). There was > a discussion about this on the list recently. > > Peter >
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