That will be a pain since so many tools can use multiple cores, and if I edit 
tool XML file, what will happen is I update Galaxy? Will those edited XML be 
replaced by the files in Galaxy-dist?


On Nov 30, 2012, at 3:01 AM, Peter Cock <> wrote:

> On Thursday, November 29, 2012, Fenglou Mao wrote:
> I can use aln -t n to ask BWA to use multiple cores if I run it in command 
> line, in Galaxy, I did not find this option even i tried "Full Parameter 
> List", anyone know how to do it? (I installed a local Galaxy server with 64 
> cores, I want to use multiple cores to run my jobs.)
> Thanks,
> Frank
> The number of cores isn't exposed to the end user (although
> in some cases it might make sense to do so), but is rather
> down to the Galaxy administrators (in some cases by editing
> the defaults in the tool XML or wrapper scripts). There was
> a discussion about this on the list recently.
> Peter

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