Hi Greg, Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is ³contra² from this repo: http://fcara...@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps:
Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed Thanks, Franco On 4/12/12 12:40 AM, "Greg Von Kuster" <g...@bx.psu.edu> wrote: > Hello Franco, > > It's impossible to help you with this issue and the issues you sent in your > previous messages unless you provide more information. What version of Galaxy > are you running? From what tool shed are you installing repositories. What > repository are you installing? What are the precise steps you took to produce > the behavior? > > Keep in mind that the Galaxy test tool shed tracks the galaxy-central > repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist > repository on bitbucket. > > Greg Von Kuster > > On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote: > >> URL: >> http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or >> +reinstall&id=88ee2d7021e4dc1a >> Module paste.exceptions.errormiddleware:143 in __call__ >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = self.application(environ, >>>> start_response) >> Module paste.debug.prints:98 in __call__ >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> environ, self.app) >> Module paste.wsgilib:539 in intercept_output >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = application(environ, >>>> replacement_start_response) >> Module paste.recursive:80 in __call__ >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, >>>> start_response) >> Module paste.httpexceptions:632 in __call__ >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, >>>> start_response) >> Module galaxy.web.framework.base:160 in __call__ >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> body = method( trans, **kwargs ) >> Module galaxy.web.framework:184 in decorator >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, >>>> **kwargs ) >> Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return >>>> self.reselect_tool_panel_section( trans, **kwd ) >> Module galaxy.web.framework:184 in decorator >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, >>>> **kwargs ) >> Module galaxy.web.controllers.admin_toolshed:1352 in >> reselect_tool_panel_section >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> status=status ) >> Module galaxy.web.framework:746 in fill_template >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.fill_template_mako( >>>> filename, **kwargs ) >> Module galaxy.web.framework:757 in fill_template_mako >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return template.render( **data ) >> Module mako.template:296 in render >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> return runtime._render(self, >>>> self.callable_, args, data) >> Module mako.runtime:660 in _render >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> **_kwargs_for_callable(callable_, >>>> data)) >> Module mako.runtime:692 in _render_context >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template(inherit, lclcontext, >>>> args=args, kwargs=kwargs) >> Module mako.runtime:718 in _exec_template >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> callable_(context, *args, **kwargs) >> Module _base_mako:42 in render_body >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(next.body())) >> Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in >> render_body >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> >>>> __M_writer(unicode(render_tool_dependency_section( >>>> install_tool_dependencies_check_box, [ repo_info_dict ] ))) >> Module _admin_tool_shed_repository_common_mako:204 in >> render_render_tool_dependency_section >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision ) >> Module posixpath:67 in join >>>> >> >>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ >>>> ate+or+reinstall&id=88ee2d7021e4dc1a#> elif path == '' or >>>> path.endswith('/'): >> AttributeError: 'NoneType' object has no attribute 'endswith' >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. 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