Please see the Megablast section on this page for instructions about getting 
and adding target databases to Galaxy:

http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup

Best,
J.
                
On Dec 10, 2012, at 2:59 PM, greg wrote:

> I have a fresh install on our cluster.
> 
> I'm trying to test out the Megablast tool.  The problem is that
> nothing is listed under "against target database".  Where do I get the
> target databases and how do I tell galaxy about them?
> 
> Thanks,
> 
> Greg
> 
> Here's what the tool looks like:
> 
> Megablast (version 1.2.0)
> Compare these sequences:
> against target database:
> using word size:
> Size of best perfect match (-word_size)
> report hits above this identity (-perc_identity):
> no cutoff if 0
> set expectation value cutoff (-evalue):
> Filter out low complexity regions? (-dust):
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