Hi all, I could use some help getting DMRAA to run. We already have a galaxy instance with pbs running, but I'd like to connect to Torque using dmraa because we eventually intend to port over to a different resource manager.
I've followed these instructions: http://apps.man.poznan.pl/trac/pbs-drmaa/wiki#Introduction http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster Got dmraa installed and exported a path in my shell config: (PREFIX is long so I omitted it) DRMAA_LIBRARY_PATH=PREFIX/drmaa/lib/libdrmaa.so.1.0.12 in my universe_wsgi.ini: start_job_runners = drmaa default_cluster_job_runner = drmaa://-q tstgalxy -V/ addValue = drmaa:/// Here's my pbs_drmaa.conf: wait_thread: 0, pool_delay: 5, keep_completed: 60, user_state_dir: PREFIX/%s/jobs, I tried something simple like the add value tool. When I run it, I get the following error state: perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_CTYPE = "en_US", LANG = "C" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). The output file is actually correct, Galaxy just thinks there's an error. I get 2 files in user_state_dir with a job number and .started (empty) and .exitcode (0). Sounds like an env issue? If I run the perl script generated in the .sh file, it works fine. Output as expected. If I use local:/// it works fine with no error. I couldn't find any documentation on how to actually link dmraa to torque. Am I missing something major? Thanks in advance, Carrie Ganote
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