> I recently run into troubles creating a visualization for a custom build 
> using a fasta file to provide the sequence lengths.
> In order to continue, I had to remove the entry from the database, ie: 
> changing the value to "{}" for name = 'dbkeys' in the 'user_preference' table.

If you can provide the steps to reproduce this error, I'd be happy to take a 
look at the issue.

> I couldn't add new wiggle or bed files to a data library using this custom 
> build. However, once in the data library I could change the genome to the 
> custom one.

This is fixed in -central changeset 0ec7f0b6dec8


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