I downloaded and extracted the .chain files for liftOver and edited the .loc 
file. After restarting Galaxy I have the option to convert my files to the 
respective coordinates but when running the job I get the same error for each. 

"Traceback (most recent call last): File 
 line 81, in raise Exception, 'Exception caught attempting conversion: ' + str( 
e ) Exception: Exception caught attempting conversion"

I also found this in the handler.log file:
"galaxy.tools DEBUG 2012-12-20 11:37:09,902 Error opening galaxy.json file: 
[Errno 2] No such file or directory: 

Do you know how could this be sorted?

Thanks in advance,

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