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On Dec 20, 2012, at 2:03 AM, Sachit Adhikari wrote:
> It seems like tophat2 does not support "--transcriptome-mismatches" option
> but Galaxy is still configured to call tophat2 with this option when run with
> "Full parameter setting" option within Galaxy. Is there new wrapper with this
> fix? If not, how to remove this option from Galaxy so that tophat2 is not
> call with this option. I am assuming that this is specified somewhere in the
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Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: