*Galaxy Dec 20, 2012 Distribution & News Brief
<http://wiki.galaxyproject.org/News/2012_12_20_DistributionNewsBrief>*
*Complete News Brief
<http://wiki.galaxyproject.org/DevNewsBriefs/2012_12_20>*
*Highlights:*
*
*Required Metadata Reset* for instances running *Tool Shed
<http://wiki.galaxyproject.org/Tool%20Shed>* repositories. Be sure
to *learn how
<http://wiki.galaxyproject.org/ResettingMetadataForInstalledRepositories>*.
*
*Simplified tool config*: all tools (including tool shed repos) can
now have handlers and runners assigned based on their "short id".
*
*New* GFF <http://wiki.galaxyproject.org/Learn/Datatypes#GFF>/GFF3
<http://wiki.galaxyproject.org/Learn/Datatypes#GFF3> annotation
support for *Cuffcompare/merge/diff
<http://cufflinks.cbcb.umd.edu/manual.html>*.
*
*More Updated* tools: *TopHat2
<http://tophat.cbcb.umd.edu/manual.html>*, *Bowtie2
<http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml>*.
*
*Multiple pull-requests* contributed by community (thanks!): *#83
<https://bitbucket.org/galaxy/galaxy-central/pull-request/83/allow-a-datatypes-merge-method-to>*,
*#85
<https://bitbucket.org/galaxy/galaxy-central/pull-request/85/another-round-of-bug-fixes-and>*,
*#90
<https://bitbucket.org/galaxy/galaxy-central/pull-request/90/patch-to-make-extended_metadata-loader>*,
*#91*
<https://bitbucket.org/galaxy/galaxy-central/pull-request/91/fixing-missing-jobwrapper-import>.
*
*Issue tracking help* is now covered in detailed in our new wiki:
*Using the Galaxy Issue Board <http://wiki.galaxyproject.org/Issues>*
*
*GCC2013 Training Day Topic Nominations
<http://wiki.galaxyproject.org/Events/GCC2013/TrainingDay> are now
open* through /*January 11th*/
<http://wiki.galaxyproject.org/Events/GCC2013/KeyDates>
*
*Plus* more *Tool Shed <http://wiki.galaxyproject.org/Tool%20Shed>*
updates, *Bug Fixes*, and improvements to *Trackster, UI, Libraries,
and Histories*.
*
getgalaxy.org <http://getgalaxy.org>*
*bitbucket.org/galaxy/galaxy-dist
<http://bitbucket.org/galaxy/galaxy-dist>*
*galaxy-dist.readthedocs.org <http://galaxy-dist.readthedocs.org>
*
new: $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
upgrade: $ hg pull -u -r 36ad8aa7b922
*Best wishes for a safe and happy holiday*,
/*The Galaxy Team <http://wiki.galaxyproject.org/Galaxy%20Team>*/
--
Jennifer Jackson
http://galaxyproject.org
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