Hi Dannon and Greg,
  upgrading as user 'galaxy' works.   I also have to update the
database from version 107 and 108.

Thanks.

Q

On 12/22/12, Dannon Baker <dannonba...@me.com> wrote:
> My guess what's going on here is that you're still logged in as the ubuntu
> user.  `sudo su galaxy` and give it another shot.
>
> -Dannon
>
> On Dec 22, 2012, at 1:51 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
>
>> Hi Quang,
>>
>> I didn't realize you were running on the cloud, which is not my area of
>> expertise - my instructions were for a local Galaxy instance.  I'll let
>> others with more knowledge of the cloud environment answer your question.
>> Please keep all replies on the mail list to enable optimal response to
>> questions and issues.
>>
>> Greg Von Kuster
>>
>> On Dec 22, 2012, at 10:45 AM, Quang Trinh wrote:
>>
>>> Hi Greg,
>>> Quick question:   I am running off Amazon EC2 and when I do the
>>> upgrade, I get the following error:
>>>
>>> Not trusting file /mnt/galaxyTools/galaxy-central/.hg/hgrc from
>>> untrusted user galaxy, group galaxy
>>> Not trusting file /mnt/galaxyTools/galaxy-central/.hg/hgrc from
>>> untrusted user galaxy, group galaxy
>>> abort: repository default not found!
>>>
>>> How do I get around this?
>>>
>>> THanks,
>>>
>>> On 12/22/12, Quang Trinh <quang.tr...@gmail.com> wrote:
>>>> Thanks Greg,  will follow the instructions from the news brief.
>>>>
>>>> Q
>>>>
>>>> On Sat, Dec 22, 2012 at 10:14 AM, Greg Von Kuster <g...@bx.psu.edu>
>>>> wrote:
>>>>> Hi Quang,
>>>>>
>>>>> You'll need to upgrade your Galaxy instance to the distribution
>>>>> release
>>>>> that went out on December 20.  Here is the link to the news brief for
>>>>> the
>>>>> December 20 release.
>>>>>
>>>>> http://wiki.galaxyproject.org/DevNewsBriefs/2012_12_20
>>>>>
>>>>> From this point forward, all communication between Galaxy and the tool
>>>>> shed will be backward compatible to this December 20 release, so new
>>>>> tool
>>>>> shed features introduced in the future will function for any Galaxy
>>>>> instance running the December 20 release or newer.
>>>>>
>>>>> Greg Von Kuster
>>>>>
>>>>>
>>>>> On Dec 22, 2012, at 9:53 AM, Quang Trinh wrote:
>>>>>
>>>>>> Hi,
>>>>>> Trying to install BWA from toolshed just now and I get these error
>>>>>> messages ( see below ).  Installing BWA from toolshed works for me
>>>>>> before.
>>>>>>
>>>>>> Thanks
>>>>>>
>>>>>> Q
>>>>>>
>>>>>>
>>>>>> Server Error
>>>>>>
>>>>>> URL:
>>>>>> http://54.242.71.44/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=25bdd3c7f0d57b06&changeset_revisions=ffa8aaa14f7c
>>>>>> Module paste.exceptions.errormiddleware:143 in __call__
>>>>>>>> app_iter = self.application(environ, start_response)
>>>>>> Module paste.debug.prints:98 in __call__
>>>>>>>> environ, self.app)
>>>>>> Module paste.wsgilib:539 in intercept_output
>>>>>>>> app_iter = application(environ, replacement_start_response)
>>>>>> Module paste.recursive:80 in __call__
>>>>>>>> return self.application(environ, start_response)
>>>>>> Module paste.httpexceptions:632 in __call__
>>>>>>>> return self.application(environ, start_response)
>>>>>> Module galaxy.web.framework.base:160 in __call__
>>>>>>>> body = method( trans, **kwargs )
>>>>>> Module galaxy.web.framework:206 in decorator
>>>>>>>> return func( self, trans, *args, **kwargs )
>>>>>> Module galaxy.webapps.galaxy.controllers.admin_toolshed:1199 in
>>>>>> prepare_for_install
>>>>>>>> description, repository_clone_url, changeset_revision, ctx_rev,
>>>>>>>> repository_owner, tool_dependencies = repo_info_tuple
>>>>>> ValueError: too many values to unpack
>>>>>> ___________________________________________________________
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>>>>>> http://lists.bx.psu.edu/
>>>>>
>>>>
>>
>>
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>
>
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