I am trying to configure Galaxy to submit jobs to a remote cluster
(specifically, an XSEDE resource to which I don't have administrative access).
I'm familiar with LWR and have read another response about configuring the
Galaxy host as a PBS submit host. What is the best approach to accomplish what
I have experimented with the cli job runner with the SecureShell and Torque
plugins. With some minimal modifications, I can run jobs via this mechanism,
but file staging fails. I haven't looked into the details of the staging
failure yet. Is this a viable approach? Is the cli job runner supported? (the
universe_wsgi.ini file says available job runners include pbs and drmaa)
I've found a similar question on the galaxy-dev mailing list, with mention of
some relevant recent work:
What is the status of the work referenced in that post?
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