Updating our Galaxy: the migration of some tools to the toolshed (let's
take picard as an example) and installing them back from the toolshed
However, during the update, I forgot to install the dependencies.
So I went to the administration part of our Galaxy, and selected 'Manage
installed tool shed repositories
the interface, I installed the dependencies for the tool (*Tool shed
repository 'picard' tool dependencies*): but this failed with an error
(SystemError: 1 or something alike).
After this error, I noticed a strange folder was created in the Galaxy
root called '. Meaning, really called ', like "'" :-)
The installer installed all jars in this folder. I am currently looking
into the code, but my first reflex was to think: the path is not
correctly set, so heading to universe_wsgi.ini! But this seemed to be a
wrong guess. Any idea what parameters are wrongly set here?
Cheers and thanks,
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: