Thanks, Dan. That helps and I'll start looking into this.

We will be pushing out a new galaxy-dist revision sometime this week if all
goes well. This revision includes some code for the history panel that may
help handle this situation a bit better. I'd recommend updating to that
revision when it comes out.

I'll let you know what I can find.
Carl



On Wed, Jan 23, 2013 at 5:18 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote:

> Hi Carl,
>
> On Wed, Jan 23, 2013 at 2:14 PM, Carl Eberhard <carlfeberh...@gmail.com>
> wrote:
> > Heya, Dan.
> >
> > Sorry for the trouble.
> > When you get that error again look for a line like you have above:
> > Debug at: http://localhost:8080/_debug/view/1358978130
> >
> > If you open a new tab or window in your browser and go to the address
> > ('http://localhost:8080/_debug ...'), you should see a more informative
> > error message - complete with a list of function calls that led to the
> error
> > (a stack trace).
> >
> > Can you post that stack trace when you see it?
> >
>
> Thanks for the quick response. Here it is:
>
> URL: http://localhost:8080/tool_runner/upload_async_create
> File
> '/Users/dtenenba/dev/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py',
> line 364 in respond
>   app_iter = self.application(environ, detect_start_response)
> File
> '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/debug/prints.py',
> line 98 in __call__
>   environ, self.app)
> File
> '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/wsgilib.py',
> line 539 in intercept_output
>   app_iter = application(environ, replacement_start_response)
> File
> '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/recursive.py',
> line 80 in __call__
>   return self.application(environ, start_response)
> File
> '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py',
> line 632 in __call__
>   return self.application(environ, start_response)
> File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/web/framework/base.py',
> line 160 in __call__
>   body = method( trans, **kwargs )
> File
> '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/web/framework/__init__.py',
> line 73 in decorator
>   return simplejson.dumps( func( self, trans, *args, **kwargs ) )
> File
> '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
> line 317 in upload_async_create
>   datasets.append( create_dataset( name ) )
> File
> '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
> line 287 in create_dataset
>   return upload_common.new_upload( trans, cntrller, ud,
> library_bunch=library_bunch,
> state=trans.app.model.HistoryDatasetAssociation.states.UPLOAD )
> File
> '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/tools/actions/upload_common.py',
> line 213 in new_upload
>   return new_history_upload( trans, uploaded_dataset, state )
> File
> '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/tools/actions/upload_common.py',
> line 118 in new_history_upload
>   hda.state = state
> File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/model/__init__.py',
> line 1048 in set_dataset_state
>   object_session( self ).add( self.dataset )
> AttributeError: 'NoneType' object has no attribute 'add'
>
> Dan
>
>
> > We can take it from there and thanks,
> > Carl
> >
> >
> > On Wed, Jan 23, 2013 at 5:04 PM, Dan Tenenbaum <dtene...@fhcrc.org>
> wrote:
> >>
> >> Hi,
> >>
> >> I installed galaxy completely from scratch:
> >>
> >> rm -rf galaxy-dist &&  hg clone
> https://bitbucket.org/galaxy/galaxy-dist/
> >>
> >> I'm not a mercurial expert but I think I have changeset
> >> 8530:a4113cc1cb5e; at least that's the first entry in "hg log".
> >>
> >> Then started galaxy like this:
> >> cd galaxy-dist
> >> ./run.sh
> >>
> >> I went to http://localhost:8080 and tried to upload a file. I never
> >> saw the file in my history, and this is what printed out in the
> >> console after I clicked "Execute" on the "Upload File" page:
> >>
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,574 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> galaxy.web.framework DEBUG 2013-01-23 13:56:11,574 Error: this request
> >> returned None from get_history():
> >> http://localhost:8080/tool_runner/upload_async_create
> >> 127.0.0.1 - - [23/Jan/2013:13:56:11 -0700] "POST
> >> /tool_runner/upload_async_create HTTP/1.1" 500 -
> >> "http://localhost:8080/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X
> >> 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko) Chrome/24.0.1312.56
> >> Safari/537.17"
> >> Debug at: http://localhost:8080/_debug/view/1358978130
> >> 127.0.0.1 - - [23/Jan/2013:13:56:11 -0700] "GET
> >> /tool_runner/upload_async_message HTTP/1.1" 200 -
> >> "http://localhost:8080/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X
> >> 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko) Chrome/24.0.1312.56
> >> Safari/537.17"
> >> 127.0.0.1 - - [23/Jan/2013:13:56:11 -0700] "GET /history HTTP/1.1" 200
> >> - "http://localhost:8080/tool_runner/upload_async_message";
> >> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/537.17
> >> (KHTML, like Gecko) Chrome/24.0.1312.56 Safari/537.17"
> >>
> >> Hope someone can help.
> >> Thanks,
> >> Dan
> >> ___________________________________________________________
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> >
> >
>
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