I think that I omitted the igvtools index command because galaxy implicitly 
manages indexes for datasets
as as defined in the datatypes_conf.xml configuration file.

I could add the igvtools index command if the galaxy implicit indexing is not 



On 1/24/13 9:49 AM, Jorge Sepulveda MD, PhD wrote:
Hi, Jim,

I very much appreciate your galaxy wrappers for igvtools. I was wondering why 
you did not include the igvtools indexer. I tried to make a wrapper for it but 
it did not work. Your help will be much appreciated!

Jorge Sepulveda, MD, PhD
Associate Director for Laboratory Medicine,
Medical Director of Laboratory Informatics,
Columbia University Medical Center
Associate Professor,
Department of Pathology & Cell Biology
Columbia University College of Physicians and Surgeons
622 W 168 St <x-apple-data-detectors://0>
New York, NY 10032 <x-apple-data-detectors://0>
Cell: (917) 862-6050 <tel:347-891-1122>
Office: 212-305-6360 <tel:212-305-6360> <>

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