I continue to see this error in the logs, every time a jobs finishes:
galaxy.objectstore CRITICAL 2013-01-30 11:42:14,161 /mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/327 delete
error [Errno 39] Directory not empty: '/mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/327'
When I check the directory, it is of course empty:
$ls -la /mnt/ngs/analysis/svcgalaxy/DATA/job_working_directory/000/327
drwxrwsr-x 2 svcgalaxy Domain Linux Users 0 Jan 30 11:42 .
drwxrwsr-x 283 svcgalaxy Domain Linux Users 5793 Jan 30 11:45 ..
Any ideas why this keeps happening?
I end up with thousands of directories in the working directories which I need to clean out manually now...
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