Hi Simon,

thank you for your contribution. I updated the toolshed version to 0.1.1
with your changes.

Ciao!
Bjoern



> Dear Galaxians,
> 
> We are using Galaxy with RepeatMasker 3.3.0.  I don't know whether that is 
> the expected version, as I can't find any statement about what is required in 
> the Galaxy tool dependencies for RepeatMasker.
> 
> Anyway, when a job is submitted with no repeats, RepeatMasker 3.3.0 doesn't 
> create the various output and summary files (.tbl, .out.gff, .out.html, 
> .masked).  This causes the Galaxy job to fail with an error message that 
> scares the end user.
> 
> I attach a patch to handle this case, by touch'ing these files before trying 
> to copy them.  Now such jobs succeed with empty output.  I think this is 
> clearer, and certainly less scary.
> 
> Is there a better mechanism for me to contribute such fixes other than 
> posting patches on this list?
> 
> cheers,
> Simon
> 
> 
> =======================================================================
> Attention: The information contained in this message and/or attachments
> from AgResearch Limited is intended only for the persons or entities
> to which it is addressed and may contain confidential and/or privileged
> material. Any review, retransmission, dissemination or other use of, or
> taking of any action in reliance upon, this information by persons or
> entities other than the intended recipients is prohibited by AgResearch
> Limited. If you have received this message in error, please notify the
> sender immediately.
> =======================================================================
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> 
>   http://lists.bx.psu.edu/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to