We've also seen that same error in our startup log:
Traceback (most recent call last):
line 447, in _load_plugin
module = __import__( module_name )
worker = threading.Thread( ( name="LwrJobRunner.thread-%d" % i ),
SyntaxError: invalid syntax
And we are also having trouble uploading files. Originally, even attempts to
add files via the Admin Data Libraries process wouldn't work. That seems to
have been resolved (coincidentally? or causally?) after another user completed
a general upload via a URL.
But even now, uploading a specific file with the Get Data -> Upload File
process is still non-responsive. Either the Execute button never does anything
at all, or the upload process appears in History and turns blue but never
From: Dan Tenenbaum [mailto:dtene...@fhcrc.org]
Sent: Friday, February 01, 2013 3:14 PM
To: Stephen Groenewold
Subject: Re: [galaxy-dev] File Upload doesn't generate any activity
On Fri, Feb 1, 2013 at 8:41 AM, Stephen Groenewold <sgroenew...@idtdna.com>
> We've installed a local instance of Galaxy and are having trouble
> with the first step of uploading files. The only thing that will
> currently upload is text pasted into the URL/Text box.
> Any attempt to upload a file using the Browse File box not only fails,
> it never even starts. It's as if the Execute button is disabled.
> I've tried changing the ajax-upload parameter to "false" in
> tools/data_source/upload.xml (as mentioned in a workaround posted to
> the list by Daniel Blankenburg in Aug 2012). I've also tried using
> different browsers (including Internet Explorer) and going the route
> of Adding Data Libraries as Admin. None of those attempts have worked.
> Am I missing a configuration setup? Could there be permissions issues
> on the Galaxy machine?
This sounds like the same issue I've reported to this list, which Carl and
others have been kind enough to look at. I think their look is still in
progress but hopefully there will be some news about it soon.
Here is that thread:
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and other Galaxy lists, please use the interface at: