Hi Jen, Thanks for your reply.
I looked at these phyloP46way-Primates datasets here : http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/primates/ They don't seem to be in bigwig format and also there is one file per chromosome. The PhyloP's add_scores.loc instructions give an impression that it may take just one bigwig file. If this is the right data, do i need to convert them into bigwig format and how? And how to configure add_scores.loc to provide multiple files (per chromosome)? Thanks, -Dina On Feb 1, 2013, at 11:55 PM, Jennifer Jackson <j...@bx.psu.edu> wrote: > Hi Dina, > > These data are available from USCS in their downloads area at > http://genome.ucsc.edu. See the left side bar for the 'Downloads' link, then > navigate to the genome release and track files (are clearly labeled). > > Best, > > Jen > Galaxy team > > Jennifer Hillman-Jackson > Galaxy Support and Training > http://galaxyproject.org > > On Feb 1, 2013, at 9:45 PM, Dinanath Sulakhe <sula...@mcs.anl.gov> wrote: > >> I am trying to setup PhyloP in galaxy. In the add_scores.loc file it says we >> need the phyloP46way.primate.bw (BigWig) file. >> #hg19 /galaxy/data/hg19/misc/phyloP46way.primate.bw >> >> Is there a downloadable bigwig files somewhere for hg19 that I can use? >>> From the instructions on bigwig, it looks like we have to create a bigwig >>> file from the wig files. >> >> Thanks, -Dina >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
