Hi Dina,

Cat files into one and convert into bigWig. UCSC has a tool "wigToBigWig" on this same downloads area available (see section "Source").


Or, in this case, you can grab our version of the data via rsync. We have the file for hg18 and for hg19 - I should have mentioned this originally! If you get the hg19 genome, the data will be in the "misc" directory, and the location dir has the .loc file with an entry you can model after (but you will need to of course alter the path to match your own system's data path):
http://wiki.galaxyproject.org/Admin/Data Integration

Hopefully this helps,

Jen
Galaxy team

On 2/1/13 11:35 PM, Dinanath Sulakhe wrote:
Hi Jen,

Thanks for your reply.

I looked at these phyloP46way-Primates datasets here : 
http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phyloP46way/primates/
They don't seem to be in bigwig format and also there is one file per 
chromosome. The PhyloP's add_scores.loc instructions give an impression that it 
may take just one bigwig file. If this is the right data, do i need to convert 
them into bigwig format and how? And how to configure add_scores.loc to provide 
multiple files (per chromosome)?

Thanks,
-Dina



On Feb 1, 2013, at 11:55 PM, Jennifer Jackson <j...@bx.psu.edu> wrote:

Hi Dina,

These data are available from USCS in their downloads area at 
http://genome.ucsc.edu. See the left side bar for the 'Downloads' link, then 
navigate to the genome release and track files (are clearly labeled).

Best,

Jen
Galaxy team

Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org

On Feb 1, 2013, at 9:45 PM, Dinanath Sulakhe <sula...@mcs.anl.gov> wrote:

I am trying to setup PhyloP in galaxy. In the add_scores.loc file it says we 
need the phyloP46way.primate.bw  (BigWig) file.
#hg19   /galaxy/data/hg19/misc/phyloP46way.primate.bw

Is there a downloadable bigwig files somewhere for hg19 that I can use?
 From the instructions on bigwig, it looks like we have to create a bigwig file 
from the wig files.

Thanks, -Dina
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Galaxy Support and Training
http://galaxyproject.org
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