The absolute fastest method would be to enable filepath upload for data
libraries (in universe_wsgi.ini -- allow_library_path_paste = True). Once
that's set, you can paste the absolute file path into the upload box, and check
the box for not copying the data. This will leave the data where it is on the
external drive, though it will make it available in the Data Library.
Obviously if you use this method, you'll need to have that external drive
attached (and always at the same mount point) to use the data.
If you actually *do* want to copy this data off the external drive, simply
don't check that 'no copy' checkbox and the data will be copied directly
through the filesystem and not uploaded.
On Feb 4, 2013, at 5:36 PM, "Thyssen, Gregory - ARS"
> I have a local instance of Galaxy running on my workstation.
> I have external hard drives full of fastq sequencing files.
> I want to make them available to myself as data libraries. I am the Admin
> and sole user at this point.
> The “upload” data libraries seems to pass the data through the (slow)
> network, even though my workstation and external hard drives are linked by
> What is the fastest way to import my files into my galaxy instance? Can I
> copy them into some folder on the workstation’s hard drive?
> Since everything is physically connected, I don’t think I should be limited
> by my network speed.
> Greg Thyssen
> Gregory Thyssen, PhD
> Molecular Biologist
> Cotton Fiber Bioscience
> USDA-ARS-Southern Regional Research Center
> 1100 Robert E Lee Blvd
> New Orleans, LA 70124
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