HI Nicola, I did upgrading. It seems that error is gone now but I got these errors. I am not sure if they are critical or due to my settings. galaxy.tools WARNING 2013-02-04 14:04:02,764 A when tag has not been defined for 'master_variable_type (master_variable_type_selector) --> allPairs', assuming empty inputs. galaxy.tools WARNING 2013-02-04 14:04:04,391 A when tag has been defined for 'manipulation (manipulation_selector) --> modify_each_score', but does not appear to be selectable. galaxy.tools.test DEBUG 2013-02-04 14:04:05,164 Error in add_param for report_discordant_pairs: Unable to determine parameter type of test input 'report_discordant_pairs'. Ensure that the parameter exists and that any container groups are defined first. docutils WARNING 2013-02-04 14:04:05,198 <string>:50: (WARNING/2) Literal block expected; none found.
galaxy.tools.test DEBUG 2013-02-04 14:04:05,209 Error in add_param for min_coverage_intron: Unable to determine parameter type of test input 'min_coverage_intron'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:05,209 Error in add_param for max_coverage_intron: Unable to determine parameter type of test input 'max_coverage_intron'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,487 Error in add_param for force: Unable to determine parameter type of test input 'force'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for input: Unable to determine parameter type of test input 'input'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group1_1: Unable to determine parameter type of test input 'group1_1'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group1_2: Unable to determine parameter type of test input 'group1_2'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group1_3: Unable to determine parameter type of test input 'group1_3'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group2_1: Unable to determine parameter type of test input 'group2_1'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group2_2: Unable to determine parameter type of test input 'group2_2'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group2_3: Unable to determine parameter type of test input 'group2_3'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools INFO 2013-02-04 14:04:07,068 Parsing the tool configuration ./migrated_tools_conf.xml -----Original Message----- From: Nicola Soranzo [mailto:sora...@crs4.it] Sent: Monday, February 04, 2013 11:52 AM To: Hakeem Almabrazi Cc: Galaxy Dev Subject: Re: [galaxy-dev] File Upload doesn't generate any activity Il giorno lun, 04/02/2013 alle 17.41 +0000, Hakeem Almabrazi ha scritto: > Thank you Nicola, > > Should I replace my current galaxy-dist with this version or is there > different way to upgrade? Take a look at this wiki page: http://wiki.galaxyproject.org/Admin/Get% 20Galaxy#Keep_your_code_up_to_date Nicola > -----Original Message----- > From: Nicola Soranzo [mailto:sora...@crs4.it] > Sent: Monday, February 04, 2013 10:50 AM > To: Hakeem Almabrazi > Cc: Dannon Baker; Galaxy Dev > Subject: Re: [galaxy-dev] File Upload doesn't generate any activity > > Il giorno lun, 04/02/2013 alle 16.33 +0000, Hakeem Almabrazi ha > scritto: > > Thank you Dannon. Hopefully things should be moving forward from now on. > > > > "This issue with the LWR has been fixed in changeset 8731:3299529e0fe8 > > which will be in the next distribution release." > > > > That will be awesome. > > It's already in galaxy-dist since Saturday 2013/02/02, changeset > 8531:3299529e0fe8 . > > Kind Regards, > Nicola > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
