On Mon, Feb 4, 2013 at 7:32 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > > > On Monday, February 4, 2013, Luobin Yang wrote: >> >> Hi, Peter, >> >> Thanks for pointing them out! >> >> The phi-blast and psi-blast actually share the same binary, both use the >> psiblast program in the NCBI BLAST+ tools. When the option -phi_pattern is >> used, then it does phi-blast searching. >> >> Best, >> Luobin >> >> > > Could you give a few command line examples of how you typically use > psiblast, focussing in the main options only? > > I would find that helpful when putting together a new wrapper - since > including all the options right away is overwhelming. > > Thanks, > > Peter
I suspect we would also need to define another datatype for the PSSM pattern files. That makes things more complicated. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
