Hi all!

When user tried to run Phantom Peak, the job was assigned to a handler by the 
manager but it keeps hanging. No messages appear on the handler.log file. 

As an admin I can use the tool successfully with no abnormal behavior. 

When the user deleted the job, the following message appeared on the handler.log

galaxy.jobs.handler DEBUG 2013-02-06 17:51:49,591 Stopping job 296:
galaxy.jobs.handler DEBUG 2013-02-06 17:51:49,592 stopping job 296 in local 
runner
galaxy.jobs.runners.local WARNING 2013-02-06 17:51:49,613 stop_job(): 296: no 
PID in database for job, unable to stop
/steno-internal/projects/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg/pysam/__init__.py:1:
 RuntimeWarning: __builtin__.file size changed, may indicate binary 
incompatibility
  from csamtools import *

Do you have any idea why this would happen?

Regards,
Nikos



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to