Hi all!

When user tried to run Phantom Peak, the job was assigned to a handler by the 
manager but it keeps hanging. No messages appear on the handler.log file. 

As an admin I can use the tool successfully with no abnormal behavior. 

When the user deleted the job, the following message appeared on the handler.log

galaxy.jobs.handler DEBUG 2013-02-06 17:51:49,591 Stopping job 296:
galaxy.jobs.handler DEBUG 2013-02-06 17:51:49,592 stopping job 296 in local 
galaxy.jobs.runners.local WARNING 2013-02-06 17:51:49,613 stop_job(): 296: no 
PID in database for job, unable to stop
 RuntimeWarning: __builtin__.file size changed, may indicate binary 
  from csamtools import *

Do you have any idea why this would happen?


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