When user tried to run Phantom Peak, the job was assigned to a handler by the
manager but it keeps hanging. No messages appear on the handler.log file.
As an admin I can use the tool successfully with no abnormal behavior.
When the user deleted the job, the following message appeared on the handler.log
galaxy.jobs.handler DEBUG 2013-02-06 17:51:49,591 Stopping job 296:
galaxy.jobs.handler DEBUG 2013-02-06 17:51:49,592 stopping job 296 in local
galaxy.jobs.runners.local WARNING 2013-02-06 17:51:49,613 stop_job(): 296: no
PID in database for job, unable to stop
RuntimeWarning: __builtin__.file size changed, may indicate binary
from csamtools import *
Do you have any idea why this would happen?
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