As far as actually building the image, the recommended method is to use
CloudBioLinux build scripts: https://github.com/chapmanb/cloudbiolinux
There is a CloudMan flavor of CBL that allows you to build only CloudMan-
and Galaxy-required parts:
https://github.com/chapmanb/cloudbiolinux/tree/master/contrib/flavor/cloudman


On Sat, Feb 9, 2013 at 12:24 AM, Dannon Baker <dannonba...@me.com> wrote:

> The workers don't need their own copy of galaxy installed, but a shared
> filesystem is a requirement for galaxy (in any cluster environment -- see
> the galaxy wiki for more
> http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster).
>  Cloudman handles managing NFS for you and sharing the
> galaxy/tools/index/data volumes.  In order for workers to communicate with
> the master instance, they'll need the cloudman installation as well, so you
> should use the same image.
>
> Now that I've answered that, I'm not sure I totally understand your
> proposed installation yet, but if you're suggesting bypassing cloudman for
> installation on a private cloud it should be possible.  You'd want the
> master instance up full time running as the galaxy front end, dispatching
> jobs to a separate cluster managed by SGE/PBS/whatever.  Basically the
> standard cluster configuration outlined in the wiki above, but you'd want
> your worker nodes automatically configured to mount the shared directories
> and join the PBS/SGE queue so they could handle jobs.
>
> Depending on what type of private cloud you're working with, it might be
> easier to just see if you can get cloudman to work :)
>
> Lastly, I swapped this message to galaxy-dev since it's about installation
> nuts and bolts.
>
> -Dannon
>
> On Feb 8, 2013, at 3:02 AM, Zeeshan Ali Shah <zas...@pdc.kth.se> wrote:
>
> > Dear Enis, thanks for reply and being you as cloudman developer it is
> good to see you in the list .
> >
> > Q2: On Workers node we need galaxy installed with its shared directories
> ? like galaxyindices , galaxydata
> > Q3: For a private cloud setup do you prefare to have  a master image
> with cloudman and galaxy and use the same image for workers as well ? or
> worker images can be vanilla OS ?
> >
> >
> > BR
> >
> > Zeeshan
> >
> > On W6-Feb 7, 2013, at 11:50 PM, Enis Afgan wrote:
> >
> >> Hi Zeeshan,
> >> In order to gain from the scalability of the cloud, SGE does need to
> run. However, CloudMan sets all that up and manages it going forward.
> >>
> >> Enis
> >>
> >>
> >> On Fri, Feb 8, 2013 at 8:59 AM, Zeeshan Ali Shah <zas...@pdc.kth.se>
> wrote:
> >> Hi,
> >>
> >> It seems that cloud man need SGE for scaling . Does SGE need also when
> run cloud on private cloud ?
> >>
> >> Zeeshan
> >> ___________________________________________________________
> >> The Galaxy User list should be used for the discussion of
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> >> use the Galaxy Development list:
> >>
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> >>
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> >>
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> >>
> >
> > ___________________________________________________________
> > The Galaxy User list should be used for the discussion of
> > Galaxy analysis and other features on the public server
> > at usegalaxy.org.  Please keep all replies on the list by
> > using "reply all" in your mail client.  For discussion of
> > local Galaxy instances and the Galaxy source code, please
> > use the Galaxy Development list:
> >
> >  http://lists.bx.psu.edu/listinfo/galaxy-dev
> >
> > To manage your subscriptions to this and other Galaxy lists,
> > please use the interface at:
> >
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>
>
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