On Fri, Feb 8, 2013 at 4:30 PM, Nicola Soranzo <sora...@crs4.it> wrote: > Il giorno mer, 06/02/2013 alle 20.01 +0100, Nicola Soranzo ha scritto: >> Hi Peter, >> I added these file formats mostly as placeholders for a future >> implementation. Now I have changed a bit the tool by removing acclist >> and seqloc_xml formats since they are not recognized by the last >> versions of dustmasker (I also sent an email to >> blast-h...@ncbi.nlm.nih.gov to inform them of this bug). >> As before, you can find the new version at: >> >> https://bitbucket.org/nsoranzo/ncbi_blast_plus >> >> I stripped the old commit and did a new one, not a very good practice, >> sorry about that.
It seems to have confused the bitbucket page a little, but I have checked in your initial wrapper to my development repository (I use the tools branch): https://bitbucket.org/peterjc/galaxy-central/commits/2284d485e36f74f19b0dbe78709b098d9eba4ef6 Note I'm not going to include this in the Tool Shed release yet, we need to sort out the file format definitions first. > Hi Peter, > I've added a new commit to this repo which updates the test output files > to (recommended) BLAST 2.2.26+, since functional tests were returning > errors. > > Hope you find it useful. Also applied to my branch, thank you - I'd forgotten to update that (but intend at some point to refresh the test files and dependency install to use BLAST 2.2.27+ instead): https://bitbucket.org/peterjc/galaxy-central/commits/f1f912f63bb4174f434e3f47eac58f2cfa3753e6 Sadly I've not actually got the unit tests to run at all yet, see: http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-February/013245.html Regards, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/