If the other outputs are fine, then the problem is likely with your data and/or
your Tophat settings.
On Feb 13, 2013, at 8:22 AM, Sachit Adhikari wrote:
> Ok sorry. I did that, but the output of splice junctions is empty. The other
> outputs looks fine. What might be the problem?
> On Wed, Feb 13, 2013 at 1:20 PM, Jeremy Goecks <jeremy.goe...@emory.edu>
> > Shall I replace:
> > /orig/path/hg19 hg19 hg19
> > /depot/data2/galaxy/bowtie2/hg19/hg19
> > with
> > hg19 hg19 hg19 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index
> Yes, that's correct.
> Finally, please email only galaxy-dev with questions about local
> installations; galaxy-user is for questions about how to use Galaxy.
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