I tried with many data but still the same problem and regarding settings I
haven't changed a thing of Tophat2. What might be causing this error?

Thanks

On Wed, Feb 13, 2013 at 7:10 PM, Jeremy Goecks <jeremy.goe...@emory.edu>wrote:

> If the other outputs are fine, then the problem is likely with your data
> and/or your Tophat settings.
>
> Good luck,
> J.
>
> On Feb 13, 2013, at 8:22 AM, Sachit Adhikari wrote:
>
> Ok sorry. I did that, but the output of splice junctions is empty. The
> other outputs looks fine. What might be the problem?
>
> Thanks,
>
> Sachit
>
> On Wed, Feb 13, 2013 at 1:20 PM, Jeremy Goecks <jeremy.goe...@emory.edu>wrote:
>
>> > Shall I replace:
>> >
>> > /orig/path/hg19        hg19    hg19
>>  /depot/data2/galaxy/bowtie2/hg19/hg19
>> >
>> > with
>> >
>> > hg19   hg19    hg19   Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index
>>
>> Yes, that's correct.
>>
>> Finally, please email only galaxy-dev with questions about local
>> installations; galaxy-user is for questions about how to use Galaxy.
>>
>> Best,
>> J.
>>
>>
>
>
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