>> But this is what's in my galaxy-dist/tool-data/bowtie2_indices.loc file: >> >> mm10 mm10 mm10 >> /usr/local/galaxy/indexes/Mus_musculus/UCSC/mm10/Sequence/Bowtie2Index
You need: /usr/local/galaxy/indexes/Mus_musculus/UCSC/mm10/Sequence/Bowtie2Index/genome J. >> >> >> Why isn't it looking in that directory for the bowtie2 files? It's >> almost as if it's reading my bowtie_indices.loc file instead? >> >> Thanks, >> >> Greg > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
