Hello,
The link appears to be one that is generated from this link (link to
"GeneTrack"):
"view in GeneTrack"
Not this link (link to "UCSC Browser", same as in tutorials, and
probably the one you want to be using anyway):
"display at UCSC main"
GeneTrack is no longer supported, although it is still present in the
current distribution. It will be removed sometime soon and for now is
best ignored. The link to UCSC main should be functional by default in
local installations - please give this one a try and let us know if you
have problems with it.
Sorry for the confusion with the GeneTrack link,
Jen
Galaxy team
On 2/20/13 11:23 AM, Perez, Ricardo wrote:
Hello,
We are running a local instance of galaxy and we get the following error when
trying to display genes from our history in the ucsc browser. I got the error
as I was following the galaxy 101 video in the galaxy website (last step).
Thanks,
--Ricardo Perez
URL:
http://galaxy.tamu.edu/dataset/display_application?user_id=None&app_name=genetrack_interval&link_name=genetrack&dataset_id=b938ed79e37fc797
Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
environ, self.app)
Module paste.wsgilib:539 in intercept_output
app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:185 in handle_request
body = method( trans, **kwargs )
Module galaxy.webapps.galaxy.controllers.dataset:748 in display_application
display_link = display_app.get_link( link_name, data, dataset_hash,
user_hash, trans )
Module galaxy.datatypes.display_applications.application:189 in get_link
return PopulatedDisplayApplicationLink( self.links[ link_name ], data,
dataset_hash, user_hash, trans )
Module galaxy.datatypes.display_applications.application:129 in __init__
self.ready, self.parameters = self.link.build_parameter_dict( self.data,
self.dataset_hash, self.user_hash, trans )
Module galaxy.datatypes.display_applications.application:66 in
build_parameter_dict
if param.ready( other_values ):
Module galaxy.datatypes.display_applications.parameters:119 in ready
raise Exception( 'A data display parameter is in the error state: %s' % (
self.name ) )
Exception: A data display parameter is in the error state: genetrack_file
extra data
full traceback
URL:
http://galaxy.tamu.edu/dataset/display_application?user_id=None&app_name=genetrack_interval&link_name=genetrack&dataset_id=b938ed79e37fc797
Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
environ, self.app)
Module paste.wsgilib:539 in intercept_output
app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:185 in handle_request
body = method( trans, **kwargs )
Module galaxy.webapps.galaxy.controllers.dataset:748 in display_application
display_link = display_app.get_link( link_name, data, dataset_hash,
user_hash, trans )
Module galaxy.datatypes.display_applications.application:189 in get_link
return PopulatedDisplayApplicationLink( self.links[ link_name ], data,
dataset_hash, user_hash, trans )
Module galaxy.datatypes.display_applications.application:129 in __init__
self.ready, self.parameters = self.link.build_parameter_dict( self.data,
self.dataset_hash, self.user_hash, trans )
Module galaxy.datatypes.display_applications.application:66 in
build_parameter_dict
if param.ready( other_values ):
Module galaxy.datatypes.display_applications.parameters:119 in ready
raise Exception( 'A data display parameter is in the error state: %s' % (
self.name ) )
Exception: A data display parameter is in the error state: genetrack_file
___________________________________________________________
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--
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org
___________________________________________________________
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