I have a working local Galaxy instance and wanted to enable DRMAA support
to utilize our SGE (or LSF) grid. Following the guide
here<http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster> I
set what I appeared to need to make this work. From the DRMAA_LIBRARY_PATH
env variable to all the configuration settings in universe_wsgi.ini,
reconfiguring the server hosting Galaxy as a submit host, etc. Some
specific config file changes made:
new_file_path =
/seq/gscidA/www/gscid_devel/htdocs/galaxy-dist/database/tmp
start_job_runners = drmaa
default_cluster_job_runner = drmaa:///
set_metadata_externally = True
outputs_to_working_directory = True
I then killed and restarted the Galaxy instance and tried a simple FASTQ ->
FASTA test execution, but it ran locally. I couldn't find any sort of
errors or messages related to DRMAA in the server log, and the job ran to
completion. I commented out the local tool runner overrides. What can I
do to test my DRMAA configuration and where should I look for errors?
Thanks -
Joshua
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