On Tue, Mar 5, 2013 at 6:49 AM, Ira Cooke <iraco...@gmail.com> wrote:
> Hi,
>
> I've just uploaded a set of updates to my proteomics tools on the toolshed.
> These contain my best attempt to implement automatic dependency installation
> ... and for the most part it seems to work.
>
> I have encountered the following issues though
>
> (1) I don't see any way to ensure that one repository_dependency is
> installed before all others.  In my case this is important because I have an
> installer package (galaxy_protk) which needs to be installed before other
> package installs will work.
>
> For example .. try installing
>
> http://toolshed.g2.bx.psu.edu/view/iracooke/omssa

I think in this case you just need to use a repository_dependencies.xml
file (but note currently this only lets you point at other repositories in
the same Tool Shed instance, i.e. http://toolshed.g2.bx.psu.edu/ here):
http://wiki.galaxyproject.org/DefiningRepositoryDependencies

Peter
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