Hi Peter, The problem is that I have multiple repositories in my repository_dependency file ... but they need to be installed in a specific order. I can't seem to get galaxy to install them in the correct order.
Ira PS: Sorry about the totally irrelevant subject line ... I've changed it. On 05/03/2013, at 9:01 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > On Tue, Mar 5, 2013 at 6:49 AM, Ira Cooke <iraco...@gmail.com> wrote: >> Hi, >> >> I've just uploaded a set of updates to my proteomics tools on the toolshed. >> These contain my best attempt to implement automatic dependency installation >> ... and for the most part it seems to work. >> >> I have encountered the following issues though >> >> (1) I don't see any way to ensure that one repository_dependency is >> installed before all others. In my case this is important because I have an >> installer package (galaxy_protk) which needs to be installed before other >> package installs will work. >> >> For example .. try installing >> >> http://toolshed.g2.bx.psu.edu/view/iracooke/omssa > > I think in this case you just need to use a repository_dependencies.xml > file (but note currently this only lets you point at other repositories in > the same Tool Shed instance, i.e. http://toolshed.g2.bx.psu.edu/ here): > http://wiki.galaxyproject.org/DefiningRepositoryDependencies > > Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/