Greetings Carl, Thanks for your response. I pulled and updated and the broken pipe error still occurs. I am using revision 9fd7fe0c5712 .
The error was regular, but now seems intermittent. I've been trying to reproduce it and could only see it cause an error once. I don't think it was doing this before, but the upload completes properly now. It still gives an error in the output, but finishes and the data is there. thanks again, Jason Jason Evans jason.j.ev...@gmail.com On Mar 7, 2013, at 9:52 AM, Carl Eberhard <carlfeberh...@gmail.com> wrote: > Hello, Jason > > At which revision of galaxy-central or galaxy-dist is your installation? > Does this happen intermittently or regularly (with every upload)? > > Thanks, > Carl > > > > On Mon, Feb 25, 2013 at 1:49 PM, Jason Evans <jason.j.ev...@gmail.com> wrote: > I am having difficulties with my local instance of Galaxy on Mac OS X. Upon > using the local file upload tool I get an error resultant of a broken pipe in > python. > > The command-line output is as follows. > > 127.0.0.1 - - [25/Feb/2013:12:36:32 -0400] "GET /history HTTP/1.1" 500 - > "http://localhost:8080/tool_runner/upload_async_message"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/536.26.17 (KHTML, like Gecko) > Version/6.0.2 Safari/536.26.17" > ---------------------------------------- > Exception happened during processing of request from ('127.0.0.1', 50438) > Traceback (most recent call last): > File > "/Users/jjevans/Work/Tools/Galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", > line 1068, in process_request_in_thread > self.finish_request(request, client_address) > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", > line 323, in finish_request > self.RequestHandlerClass(request, client_address, self) > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", > line 641, in __init__ > self.finish() > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", > line 694, in finish > self.wfile.flush() > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/socket.py", > line 303, in flush > self._sock.sendall(view[write_offset:write_offset+buffer_size]) > error: [Errno 32] Broken pipe > ---------------------------------------- > 127.0.0.1 - - [25/Feb/2013:12:36:34 -0400] "GET > /api/histories/2a56795cad3c7db3 HTTP/1.1" 200 - > "http://localhost:8080/history"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_8_2) AppleWebKit/536.26.17 (KHTML, like Gecko) Version/6.0.2 > Safari/536.26.17" > galaxy.jobs.manager DEBUG 2013-02-25 12:36:35,289 (77) Job assigned to > handler 'upload_handler' > > > > My instance has worked for this task in the past, but I'm not sure if it has > been since my last Galaxy update or perhaps something with my configuration > changed. > > thanks for your help, > > Jason > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ >
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