Glad to hear it's working,
Carl


On Tue, Mar 12, 2013 at 11:47 AM, Eric Enns <eric.e...@phac-aspc.gc.ca>wrote:

> Hey,
>
> My bad I didn't see the patch and thought you had wanted me to revert to
> the Sept 12 release for that function. I now applied the patch, and am
> seeing the correct error when clicking the bug button. If I encounter any
> issue I will post back.
>
>
> -Eric
>
> -----Carl Eberhard <carlfeberh...@gmail.com> wrote: -----
> To: Eric Enns <eric.e...@phac-aspc.gc.ca>
> From: Carl Eberhard <carlfeberh...@gmail.com>
> Date: 03/12/2013 10:15AM
>
> Cc: "galaxy-...@bx.psu.edu" <galaxy-...@bx.psu.edu>, Jean-Francois
> Payotte <jean-francois.payo...@dnalandmarks.ca>
> Subject: Re: [galaxy-dev] Error Report contains STDERR from different job
>
> Thanks, Eric
>
> Since the HDA is None, the if statement should be sending you the
> trans.show_error_message.
>
> Just to make sure we're on the same page, could you please attach or post
> the errors method from the dataset controller in your installation. It can
> be found at lib/galaxy/webapps/galaxy/controllers/dataset.py?
>
> Carl
>
>
>
> On Tue, Mar 12, 2013 at 10:59 AM, Eric Enns <eric.e...@phac-aspc.gc.ca>wrote:
>
>> The following is the stack trace I got when I applied the patch and
>> clicked the bug icon.
>>
>> "GET /dataset/errors?id=c39bc73d0eae67dd HTTP/1.0" 500 - "
>> http://galaxy/history";
>> Error - <type 'exceptions.AttributeError'>: 'NoneType' object has no
>> attribute 'hid'
>> URL: http://galaxy/dataset/errors?id=c39bc73d0eae67dd
>> File
>> '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
>> line 143 in __call_ _
>>   app_iter = self.application(environ, start_response)
>> File '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80
>> in __call__
>>   return self.application(environ, start_response)
>> File '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
>> line 632 in __call__
>>   return self.application(environ, start_response)
>> File '/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
>>   return self.handle_request( environ, start_response )
>> File '/galaxy-dist/lib/galaxy/web/framework/base.py', line 185 in
>> handle_request
>>   body = method( trans, **kwargs )
>> File '/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/dataset.py',
>> line 175 in errors
>>   return trans.fill_template( "dataset/errors.mako", hda=hda )
>> File '/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 848 in
>> fill_template
>>   return self.fill_template_mako( filename, **kwargs )
>> File '/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 859 in
>> fill_template_mako
>>   return template.render( **data )
>> File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py', line 296
>> in render
>>   return runtime._render(self, self.callable_, args, data)
>> File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 660
>> in _render
>>   **_kwargs_for_callable(callable_, data))
>> File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 692
>> in _render_context
>>   _exec _template(inherit, lclcontext, args=args, kwargs=kwargs)
>> File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 718
>> in _exec_template
>>   callable _(context, *args, **kwargs)
>>
>> File '/galaxy-dist/database/compiled_templates/dataset/errors.mako.py',
>> line 27 in render_body
>>   __M_writer(unicode(hda.hid))
>> AttributeError: 'NoneType' object has no attribute 'hid'
>>
>>
>> -----Carl Eberhard <carlfeberh...@gmail.com> wrote: -----
>> To: Eric Enns <eric.e...@phac-aspc.gc.ca>
>> From: Carl Eberhard <carlfeberh...@gmail.com>
>> Date: 03/12/2013 09:47AM
>> Cc: "galaxy-...@bx.psu.edu" <galaxy-...@bx.psu.edu>, Jean-Francois
>> Payotte <jean-francois.payo...@dnalandmarks.ca>
>>
>> Subject: Re: [galaxy-dev] Error Report contains STDERR from different job
>>
>> Can you post the stack trace from the error, please?
>>
>> Thanks for the info,
>> Carl
>>
>>
>> On Tue, Mar 12, 2013 at 10:37 AM, Eric Enns <eric.e...@phac-aspc.gc.ca>wrote:
>>
>>> Hey,
>>>
>>> I applied the patch and it does not help, instead I received a server
>>> error since hda was none. If it helps at all I am using mysql as my backend.
>>>
>>> -Eric
>>>
>>> -----Carl Eberhard <carlfeberh...@gmail.com> wrote: -----
>>>  To: Jean-Francois Payotte <jean-francois.payo...@dnalandmarks.ca>
>>> From: Carl Eberhard <carlfeberh...@gmail.com>
>>> Date: 03/08/2013 05:10PM
>>> Cc: eric.e...@phac-aspc.gc.ca, "galaxy-...@bx.psu.edu" <
>>> galaxy-...@bx.psu.edu>
>>> Subject: Re: [galaxy-dev] Error Report contains STDERR from different job
>>>
>>>
>>> Hello,
>>> Does applying the patch from "[galaxy-dev] Strange issue where the
>>> dataset reported in the bug report doesn't correspond to the current
>>> dataset" help?
>>>
>>> If not, we can diagnose further. Thanks,
>>> Carl
>>>
>>>
>>>
>>> On Fri, Mar 8, 2013 at 3:35 PM, Jean-Francois Payotte <
>>> jean-francois.payo...@dnalandmarks.ca> wrote:
>>>
>>>> Dear Eric,
>>>>
>>>> I'm glad to know that I am not the only one having this bug. (Even
>>>> though I would prefer if neither of us would have it). ;)
>>>>
>>>> I've already written twice to the galaxy mailing-list, but I didn't
>>>> receive any answers so far.
>>>> Let's hope someone will be able to help us solve this issue.
>>>>
>>>> You can see my mail thread here:
>>>> http://dev.list.galaxyproject.org/Strange-issue-where-the-dataset-reported-in-the-bug-report-doesn-t-correspond-to-the-current-dataset-td4658707.html
>>>>
>>>> Best regards,
>>>>
>>>> *Jean-Francois*
>>>>
>>>>
>>>>
>>>>
>>>> From:        Eric Enns <eric.e...@phac-aspc.gc.ca>
>>>> To:        galaxy-...@bx.psu.edu
>>>> Date:        08/03/2013 03:14 PM
>>>> Subject:        [galaxy-dev] Error Report contains STDERR from
>>>> different job
>>>> Sent by:        galaxy-dev-boun...@lists.bx.psu.edu
>>>> ------------------------------
>>>>
>>>>
>>>>
>>>> Hey,
>>>>
>>>> When clicking the "View or report this error button" the error message
>>>> shown occasionally is from a different job. If you go into the info for the
>>>> job you can select stderr and see the correct error. If the user submits
>>>> the error to admins they receive the wrong error message and a link to the
>>>> wrong history.
>>>>
>>>> -Eric_____________________ ______ _________________ _______ ________
>>>>
>>>> Please keep all replies on the list by using "reply all"
>>>> in your mail client.  To manage your subscriptions to this
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>>>>
>>>>
>>>> http://lists.bx.psu.edu/
>>>>
>>>> ____ ______________________ ___ ________ ____________ _____ _____
>>>>
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>>>>
>>>
>>>
>>
>
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