On Wed, Mar 20, 2013 at 3:47 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Wed, Mar 20, 2013 at 3:43 PM, Raj Ayyampalayam <ra...@uga.edu> wrote:
>> Hi Guys,
>>
>> Thanks for the quick response. I installed the latest blast datatypes from
>> the toolshed and that fixed the issue.
>
> Great - thanks for letting us know so promptly.
>
>> Peter, can you also fix the  $outfile.extra_files_path to
>> $outfile.files_path on line 5 in the makedb wrapper xml file.
>
> What do you mean 'fix' it? It should be using extra_files_path
> shouldn't it? This is a composite datatype in Galaxy.

Are you perhaps running jobs as real user? That might explain
when this difference is important:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-April/009579.html
http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-March/013889.html

Thanks,

Peter
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