Yes, this is the case.

I have:

galaxy-dist/tools/${category}/BINARY
galaxy-dist/tools/${category}/BINARY.xml

Where BINARY.xml contains the <tool ...><command>BINARY... XML code.

Is there a good way to see what Galaxy is exactly executing for the tool? I 
could not find a description on how to do that anywhere on the internet (*sigh* 
apparently one cannot find anything related to Galaxy, at least since the term 
Galaxy got "hijacked" by the smartphone of the same name ;).

Thanks,
Manuel
________________________________________
From: Björn Grüning [bjoern.gruen...@pharmazie.uni-freiburg.de]
Sent: Wednesday, April 10, 2013 11:37 PM
To: Holtgrewe, Manuel
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] "Local install" of Galaxy Tool

Hi Manuel,

is your XML file also under ${galaxy_root}/tools/${category}/ ? It
should be.

Tata,
Bjoern

> Dear all, I am trying to follow the Admin Add Tool Tutorial [1]. I put my 
> binary BINARY into the location ${galaxy_root}/tools/${category}/BINARY. 
> However, it is not found using if the <command> tag looks as follows:
>
> <command>BINARY (arguments)</command>
>
> When I put the following, it works:
>
> <command>$__root_dir__/tools/CATEGORY/BINARY</command>
>
> Am I doing something wrong? Is there a preferable way to such a "local" 
> installation than my second try?
>
> Thanks!
> Manuel
>
> [1] http://wiki.galaxyproject.org/Admin/Tools/Add%20Tool%20Tutorial
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