On Tue, Apr 16, 2013 at 9:42 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:

> Hello Peter,
>
> On Apr 15, 2013, at 11:04 AM, Peter Cock wrote:
>
> The "View tool functional test results" option clearly lists failed tests,
> but it is not obvious if there were any successful tests. Could that
> be indicated somehow (e.g. five tests passed for tool xxx).
>
>
> If I understand your request, I believe we already provide it.  Functional
> test results are displayed for tests that passed or failed.  For example,
> see the functional test results for revision 
> 3:aa76c8dd97e6<http://toolshed.g2.bx.psu.edu/repository/view_changelog?id=9a07f99536a91e29>
>  of jjohnson's pileup_to_vcf
> repository, which displays the following.  Is this what you are asking for?
>
> Thanks!
>
>
> *Tests that failed*
>   Tool id: *pileup_to_vcf* version: *2.0*  *Test id* test_tool_000001 (
> functional.test_toolbox.TestForTool_toolshed.g2.bx.psu.edu/repos/jjohnson/pileup_to_vcf/pileup_to_vcf/2.0
> )  *Status* Test failed  *Stderr*  *Traceback*
> Traceback (most recent call last):
>
>   File 
> "/var/opt/buildbot/slaves/buildbot-install-test-1/buildbot-install-test-main-tool-shed-py27/build/test/functional/test_toolbox.py",
>  line 171, in test_tool
>     self.do_it( td, shed_tool_id=shed_tool_id )
>
>   File 
> "/var/opt/buildbot/slaves/buildbot-install-test-1/buildbot-install-test-main-tool-shed-py27/build/test/functional/test_toolbox.py",
>  line 102, in do_it
>
>     self.verify_dataset_correctness( outfile, hid=elem_hid, 
> maxseconds=testdef.maxseconds, attributes=attributes, 
> shed_tool_id=shed_tool_id )
>
>   File 
> "/var/opt/buildbo<t/slaves/buildbot-install-test-1/buildbot-install-test-main-tool-shed-py27/build/test/base/twilltestcase.py",
>  line 798, in verify_dataset_correctness
>     raise AssertionError( errmsg )
> AssertionError: History item 2 different than expected
>
> No text matching expression 'chr1\t158571283\t.\tA\tC\t.\tPASS\t.*' was found 
> in output file.
>   *Tests that passed successfully*
>   Tool id: *pileup_to_vcf* version: *2.0*  *Test id* test_tool_000000 (
> functional.test_toolbox.TestForTool_toolshed.g2.bx.psu.edu/repos/jjohnson/pileup_to_vcf/pileup_to_vcf/2.0
> )  *Status* Test passed
>
>
>
That does look good - maybe I've been unlucky in the examples I've looked
at due to missing dependencies and/or true results being hidden by this
issue:

https://trello.com/card/toolshed
-automated-functional-test-bug/506338ce32ae458f6d15e4b3/793

Thanks,

Peter
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